bam_impute_quilt

Subworkflow to impute BAM files using QUILT software. Variants location to impute are obtain through the tsv file given

BAMimputationquilt

https://github.com/nf-core/modules/[...]/subworkflows/nf-core/bam_impute_quilt

Description

Subworkflow to impute BAM files using QUILT software. Variants location to impute are obtain through the tsv file given

Input

name

description

pattern

`ch_input`

Channel with input data

`ch_hap_legend`

Channel with reference panel variants data

`ch_posfile`

Channel with position to call variants by chromosomes

`ch_chunks`

Channel with chromosome chunks data

`ch_map`

Channel with genetic map data

`ch_fasta`

Channel with reference genome data

`n_gen`

Number of generations since founding or mixing

`buffer`

Buffer of region to perform imputation over

Output